The Gulf of Gabès on the southern coasts of Tunisia in the central part of the Mediterranean is a very shallow basin, characterized by semidiurnal tides, attaining a range of 2.3 m during spring tides. The intertidal zone was covered by extended Zostera (Zosterella) noltei Hornemann , 1832 beds mainly developed around the Kneiss Islands while tidal channels ensured the water circulation in this sub-tropical environment with very low freshwater input and high summer temperature. In spite of protected conventions, the area remained under high human pressures: overfishing, and the impact of the pollution of the phosphate industry. Intensive sampling in both intertidal and shallow subtidal zones during annual cycles permitted to identify a rich macrofauna which increase considerably the species known in this eastern part of the Mediterranean Sea. More than 50 species are added for the Tunisian fauna. Moreover, patterns of diversity are analysed with the sediment types, presence or absence of Zostera noltei seagrass bed, and human pressures. The list of the collected species are compared with those of surrounding areas in both Western and Eastern Mediterranean Sea.